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    nfya nuclear transcription factor Y, alpha [ Megalobrama amblycephala (Wuchang bream) ]

    Gene ID: 125256557, updated on 22-Mar-2024

    Summary

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    Gene symbol
    nfya
    Gene description
    nuclear transcription factor Y, alpha
    See related
    EnsemblRapid:ENSMAYG00005024010
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megalobrama amblycephala
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
    Orthologs
    zebrafish all
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    Genomic context

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    See nfya in Genome Data Viewer
    Location:
    chromosome: LG21
    Exon count:
    9
    Annotation release Status Assembly LG Location
    100 current ASM1881202v1 (GCF_018812025.1) LG21 NC_063064.1 (26967636..26974852, complement)

    Linkage Group LG21 - NC_063064.1Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor Neighboring gene caveolin 4a Neighboring gene sortilin 1a Neighboring gene proteasome 20S subunit alpha 5 Neighboring gene synaptophysin-like 2a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_063064.1 Chromosome LG21 Reference ASM1881202v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1881202v1 Primary Assembly

    Genomic

    1. NC_063064.1 Reference ASM1881202v1 Primary Assembly

      Range
      26967636..26974852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048172638.1 → XP_048028595.1  nuclear transcription factor Y subunit alpha isoform X2

    2. XM_048172637.1 → XP_048028594.1  nuclear transcription factor Y subunit alpha isoform X1

      Related
      ENSMAYP00005056245.1, ENSMAYT00005061200.1

    3. XM_048172639.1 → XP_048028596.1  nuclear transcription factor Y subunit alpha isoform X3

      Related
      ENSMAYP00005056238.1, ENSMAYT00005061193.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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