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    SORBS2-AS1 SORBS2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 125177376, updated on 12-Sep-2024

    Summary

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    Official Symbol
    SORBS2-AS1provided by HGNC
    Official Full Name
    SORBS2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:41039
    See related
    Ensembl:ENSG00000233110
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See SORBS2-AS1 in Genome Data Viewer
    Location:
    4q35.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (185587925..185594003)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (188928711..188934802)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (186509079..186515157)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15856 Neighboring gene uncharacterized LOC105377590 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:186401399-186401900 Neighboring gene coiled-coil domain containing 110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:186423455-186423954 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:186434842-186436041 Neighboring gene PDZ and LIM domain 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:186480278-186481124 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:186481125-186481969 Neighboring gene VISTA enhancer hs2502 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:186508176-186509375 Neighboring gene sorbin and SH3 domain containing 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:186559524-186560163 Neighboring gene Sharpr-MPRA regulatory region 2405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:186633271-186633806 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:186650535-186650732 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:186658253-186658822 Neighboring gene Sharpr-MPRA regulatory region 123 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:186717334-186717850 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:186717851-186718366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:186742039-186742866 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:186760070-186761269 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:186784850-186784952 Neighboring gene uncharacterized LOC101928929 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AC093797.1 as a Potential Biomarker to Indicate the Prognosis of Hepatocellular Carcinoma and Inhibits Cell Proliferation, Invasion, and Migration by Reprogramming Cell Metabolism and Extracellular Matrix Dynamics. Liu X, et al. Front Genet, 2021. PMID 34925460, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • RP11-301L8.2

    Clone Names

    • AC093797.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_186082.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093797
      Related
      ENST00000411847.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      185587925..185594003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      188928711..188934802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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