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    LOC123882493 ubiquitin-like domain-containing protein CIP73 [ Trifolium pratense ]

    Gene ID: 123882493, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC123882493
    Gene description
    ubiquitin-like domain-containing protein CIP73
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trifolium pratense
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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    Genomic context

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    See LOC123882493 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    17
    Annotation release Status Assembly LG Location
    100 current ARS_RC_1.1 (GCF_020283565.1) LG4 NC_060062.1 (41603226..41612725, complement)

    Linkage Group LG4 - NC_060062.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S11 Neighboring gene 40S ribosomal protein S11-like Neighboring gene PKS-NRPS hybrid synthetase cheA-like Neighboring gene protein MAIN-LIKE 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_060062.1 Chromosome LG4 Reference ARS_RC_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. Yates SA, et al. BMC Genomics, 2014 Jun 9. PMID 24912738, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables misfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BAT3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like domain-containing protein CIP73

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trifolium pratense Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS_RC_1.1 Primary Assembly

    Genomic

    1. NC_060062.1 Reference ARS_RC_1.1 Primary Assembly

      Range
      41603226..41612725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045931358.1 → XP_045787314.1  ubiquitin-like domain-containing protein CIP73 isoform X3

    2. XM_045931357.1 → XP_045787313.1  ubiquitin-like domain-containing protein CIP73 isoform X2

    3. XM_045931356.1 → XP_045787312.1  ubiquitin-like domain-containing protein CIP73 isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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