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    LOC123451926 protein indeterminate-domain 5, chloroplastic-like [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123451926, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123451926
    Gene description
    protein indeterminate-domain 5, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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    Genomic context

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    See LOC123451926 in Genome Data Viewer
    Location:
    chromosome: 5H
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 5H NC_058522.1 (513141670..513148916)

    Chromosome 5H - NC_058522.1Genomic Context describing neighboring genes Neighboring gene actin-related protein 4-like Neighboring gene receptor kinase-like protein Xa21 Neighboring gene protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 Neighboring gene phytoene synthase 2, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058522.1 Chromosome 5H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein indeterminate-domain 5, chloroplastic-like
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058522.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      513141670..513148916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045128487.1 → XP_044984422.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_045128485.1 → XP_044984420.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_045128484.1 → XP_044984419.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    4. XM_045128488.1 → XP_044984423.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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