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    LOC123403977 U-box domain-containing protein 24-like [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123403977, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123403977
    Gene description
    U-box domain-containing protein 24-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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    Genomic context

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    See LOC123403977 in Genome Data Viewer
    Location:
    chromosome: 6H
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 6H NC_058523.1 (561597598..561601762, complement)

    Chromosome 6H - NC_058523.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-arabinosyltransferase XAT3-like Neighboring gene alpha-1,3-arabinosyltransferase XAT3-like Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase Neighboring gene probable disease resistance protein At1g61300

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058523.1 Chromosome 6H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 24-like
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058523.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      561597598..561601762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045097877.1 → XP_044953812.1  U-box domain-containing protein 24-like

      UniProtKB/TrEMBL
      F2CTE6
      Conserved Domains (2) summary
      smart00504
      Location:25 → 93
      Ubox; Modified RING finger domain
      PLN03200
      Location:111 → 550
      PLN03200; cellulose synthase-interactive protein; Provisional

    2. XM_045097878.1 → XP_044953813.1  U-box domain-containing protein 24-like

      UniProtKB/TrEMBL
      F2CTE6
      Conserved Domains (2) summary
      smart00504
      Location:25 → 93
      Ubox; Modified RING finger domain
      PLN03200
      Location:111 → 550
      PLN03200; cellulose synthase-interactive protein; Provisional

    3. XM_045097876.1 → XP_044953811.1  U-box domain-containing protein 24-like

      UniProtKB/TrEMBL
      F2CTE6
      Conserved Domains (2) summary
      smart00504
      Location:25 → 93
      Ubox; Modified RING finger domain
      PLN03200
      Location:111 → 550
      PLN03200; cellulose synthase-interactive protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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