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    LOC123400110 transcription initiation factor IIB [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123400110, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123400110
    Gene description
    transcription initiation factor IIB
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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    Genomic context

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    See LOC123400110 in Genome Data Viewer
    Location:
    chromosome: 5H
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 5H NC_058522.1 (502215190..502219238)

    Chromosome 5H - NC_058522.1Genomic Context describing neighboring genes Neighboring gene ER lumen protein-retaining receptor erd-2.2-like Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene putative serpin-Z8 Neighboring gene putative serpin-Z8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058522.1 Chromosome 5H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor IIB
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058522.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      502215190..502219238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045094521.1 → XP_044950456.1  transcription initiation factor IIB

      UniProtKB/TrEMBL
      F2ECG8
      Conserved Domains (1) summary
      COG1405
      Location:6 → 291
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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