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    LOC123199277 cytochrome P450 84A1-like [ Mangifera indica (mango) ]

    Gene ID: 123199277, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123199277
    Gene description
    cytochrome P450 84A1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mangifera indica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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    Genomic context

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    See LOC123199277 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current CATAS_Mindica_2.1 (GCF_011075055.1) 16 NC_058152.1 (425373..427194)

    Chromosome 16 - NC_058152.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 5-like Neighboring gene ctenidin-3-like Neighboring gene protein FMP32, mitochondrial-like Neighboring gene uncharacterized LOC123199711

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058152.1 Chromosome 16 Reference CATAS_Mindica_2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 84A1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CATAS_Mindica_2.1

    Genomic

    1. NC_058152.1 Reference CATAS_Mindica_2.1

      Range
      425373..427194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044614175.1 → XP_044470110.1  cytochrome P450 84A1-like

      Conserved Domains (1) summary
      PLN02183
      Location:1 → 507
      PLN02183; ferulate 5-hydroxylase
    Nucleotide Protein
    Heading Accession and Version

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