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    LOC122912377 tubulin-specific chaperone cofactor E-like protein [ Neogale vison (American mink) ]

    Gene ID: 122912377, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC122912377
    Gene description
    tubulin-specific chaperone cofactor E-like protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neogale vison
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
    Also known as
    TBCEL
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    Genomic context

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    See LOC122912377 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    100 current ASM_NN_V1 (GCF_020171115.1) 7 NC_058097.1 (110523742..110680600)

    Chromosome 7 - NC_058097.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC122912378 Neighboring gene sterol-C5-desaturase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058097.1 Chromosome 7 Reference ASM_NN_V1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-tectorin; tubulin-specific chaperone cofactor E-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM_NN_V1 Primary Assembly

    Genomic

    1. NC_058097.1 Reference ASM_NN_V1 Primary Assembly

      Range
      110523742..110680600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044258063.1 → XP_044113998.1  alpha-tectorin isoform X1

      Conserved Domains (7) summary
      smart00216
      Location:632 → 796
      VWD; von Willebrand factor (vWF) type D domain
      smart00241
      Location:2119 → 2373
      ZP; Zona pellucida (ZP) domain
      smart00539
      Location:417 → 573
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      smart00832
      Location:836 → 910
      C8; This domain contains 8 conserved cysteine residues
      COG4886
      Location:47 → 225
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cl17735
      Location:971 → 1025
      VWC; von Willebrand factor type C domain

    2. XM_044258065.1 → XP_044114000.1  tubulin-specific chaperone cofactor E-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8C7AAS9, U6CVY5
      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    3. XM_044258064.1 → XP_044113999.1  alpha-tectorin isoform X2

      UniProtKB/TrEMBL
      A0A8C7A276
      Conserved Domains (5) summary
      smart00216
      Location:313 → 477
      VWD; von Willebrand factor (vWF) type D domain
      smart00241
      Location:1805 → 2059
      ZP; Zona pellucida (ZP) domain
      smart00539
      Location:98 → 254
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      smart00832
      Location:517 → 591
      C8; This domain contains 8 conserved cysteine residues
      cl17735
      Location:652 → 706
      VWC; von Willebrand factor type C domain
    Nucleotide Protein
    Heading Accession and Version

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