U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC122883487 E3 ubiquitin/ISG15 ligase TRIM25-like [ Siniperca chuatsi (mandarin fish) ]

    Gene ID: 122883487, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC122883487
    Gene description
    E3 ubiquitin/ISG15 ligase TRIM25-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Siniperca chuatsi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC122883487 in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    4
    Annotation release Status Assembly LG Location
    100 current ASM2008510v1 (GCF_020085105.1) LG10 NC_058051.1 (7023356..7028619)

    Linkage Group LG10 - NC_058051.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 7a Neighboring gene twist-related protein 2-like Neighboring gene MICOS complex subunit mic25a-like Neighboring gene plexin-A1-like Neighboring gene uncharacterized LOC122882840

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_058051.1 Chromosome LG10 Reference ASM2008510v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin/ISG15 ligase TRIM25-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2008510v1 Primary Assembly

    Genomic

    1. NC_058051.1 Reference ASM2008510v1 Primary Assembly

      Range
      7023356..7028619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044212238.1 → XP_044068173.1  E3 ubiquitin/ISG15 ligase TRIM25-like

      Conserved Domains (3) summary
      cl00034
      Location:105 → 148
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:372 → 543
      SPRY; SPRY domain
      cl17238
      Location:13 → 61
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases