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    usp8 ubiquitin specific peptidase 8 [ Siniperca chuatsi (mandarin fish) ]

    Gene ID: 122877009, updated on 22-Mar-2024

    Summary

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    Gene symbol
    usp8
    Gene description
    ubiquitin specific peptidase 8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Siniperca chuatsi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
    Orthologs
    human zebrafish all
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    Genomic context

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    See usp8 in Genome Data Viewer
    Location:
    chromosome: LG1
    Exon count:
    20
    Annotation release Status Assembly LG Location
    100 current ASM2008510v1 (GCF_020085105.1) LG1 NC_058042.1 (10251056..10263537, complement)

    Linkage Group LG1 - NC_058042.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 6 Neighboring gene uncharacterized LOC122877346 Neighboring gene uncharacterized LOC122877144 Neighboring gene very long-chain acyl-CoA synthetase-like Neighboring gene histidine decarboxylase Neighboring gene very long-chain acyl-CoA synthetase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058042.1 Chromosome LG1 Reference ASM2008510v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Ras protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in midbody IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2008510v1 Primary Assembly

    Genomic

    1. NC_058042.1 Reference ASM2008510v1 Primary Assembly

      Range
      10251056..10263537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044198115.1 → XP_044054050.1  ubiquitin carboxyl-terminal hydrolase 8

      Conserved Domains (4) summary
      PTZ00121
      Location:475 → 606
      PTZ00121; MAEBL; Provisional
      COG5560
      Location:752 → 934
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
      cd02674
      Location:756 → 1085
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl00125
      Location:180 → 310
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    2. XM_044198199.1 → XP_044054134.1  ubiquitin carboxyl-terminal hydrolase 8

      Conserved Domains (4) summary
      PTZ00121
      Location:475 → 606
      PTZ00121; MAEBL; Provisional
      COG5560
      Location:752 → 934
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
      cd02674
      Location:756 → 1085
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl00125
      Location:180 → 310
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version

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