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    LOC122822061 prostaglandin E2 receptor EP1 subtype-like [ Gambusia affinis (western mosquitofish) ]

    Gene ID: 122822061, updated on 28-May-2024

    Summary

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    Gene symbol
    LOC122822061
    Gene description
    prostaglandin E2 receptor EP1 subtype-like
    See related
    EnsemblRapid:ENSGAFG00005016782
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gambusia affinis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
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    Genomic context

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    See LOC122822061 in Genome Data Viewer
    Location:
    chromosome: LG19
    Exon count:
    3
    Annotation release Status Assembly LG Location
    100 current SWU_Gaff_1.0 (GCF_019740435.1) LG19 NC_057886.1 (4113221..4121489, complement)

    Linkage Group LG19 - NC_057886.1Genomic Context describing neighboring genes Neighboring gene phenylalanyl-tRNA synthetase subunit alpha Neighboring gene interleukin enhancer binding factor 3b Neighboring gene uncharacterized LOC122822063 Neighboring gene WIZ zinc finger b Neighboring gene peptidoglycan recognition protein 6 Neighboring gene trafficking protein particle complex subunit 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057886.1 Chromosome LG19 Reference SWU_Gaff_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prostaglandin E receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thromboxane receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prostaglandin E2 receptor EP1 subtype-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SWU_Gaff_1.0 Primary Assembly

    Genomic

    1. NC_057886.1 Reference SWU_Gaff_1.0 Primary Assembly

      Range
      4113221..4121489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044100424.1 → XP_043956359.1  prostaglandin E2 receptor EP1 subtype-like

      Related
      ENSGAFP00005047525.1, ENSGAFT00005049719.1
      Conserved Domains (1) summary
      cd15144
      Location:29 → 330
      7tmA_PGE2_EP1; prostaglandin E2 receptor EP1 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases