U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC122791500 mucin-5AC-like [ Protopterus annectens (West African lungfish) ]

    Gene ID: 122791500, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC122791500
    Gene description
    mucin-5AC-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Protopterus annectens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 17.part0
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    100 current PAN1.0 (GCF_019279795.1) 17.part0 NC_056751.1 (696286677..696559353, complement)

    Chromosome 17.part0 - NC_056751.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene ribosomal protein S11 Neighboring gene trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like Neighboring gene trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_056751.1 Chromosome 17.part0 Reference PAN1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    mucin-5AC-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAN1.0 Primary Assembly

    Genomic

    1. NC_056751.1 Reference PAN1.0 Primary Assembly

      Range
      696286677..696559353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044059242.1 → XP_043915177.1  mucin-5AC-like

      Conserved Domains (9) summary
      PRK15370
      Location:4106 → 4266
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00214
      Location:4926 → 4990
      VWC; von Willebrand factor (vWF) type C domain
      smart00215
      Location:378 → 422
      VWC_out; von Willebrand factor (vWF) type C domain
      smart00216
      Location:876 → 1034
      VWD; von Willebrand factor (vWF) type D domain
      smart00832
      Location:606 → 687
      C8; This domain contains 8 conserved cysteine residues
      PHA03247
      Location:1867 → 2496
      PHA03247; large tegument protein UL36; Provisional
      COG5651
      Location:4226 → 4561
      COG5651; PPE-repeat protein [Function unknown]
      pfam05109
      Location:3381 → 3726
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl21545
      Location:5081 → 5178
      GHB_like; Glycoprotein hormone beta chain homologues
    Nucleotide Protein
    Heading Accession and Version