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    LOC122693632 tubulin-specific chaperone cofactor E-like protein [ Cervus elaphus (red deer) ]

    Gene ID: 122693632, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC122693632
    Gene description
    tubulin-specific chaperone cofactor E-like protein
    See related
    EnsemblRapid:ENSCESG00005003187 EnsemblRapid:ENSCESG00005003970
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cervus elaphus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
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    Genomic context

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    See LOC122693632 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    100 current mCerEla1.1 (GCF_910594005.1) 1 NC_057815.1 (45241513..45403222)

    Chromosome 1 - NC_057815.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene sterol-C5-desaturase Neighboring gene sortilin related receptor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057815.1 Chromosome 1 Reference mCerEla1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-tectorin; tubulin-specific chaperone cofactor E-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cervus elaphus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCerEla1.1

    Genomic

    1. NC_057815.1 Reference mCerEla1.1

      Range
      45241513..45403222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043901299.1 → XP_043757234.1  alpha-tectorin isoform X2

      Related
      ENSCESP00005004279.1, ENSCEST00005005018.1
      Conserved Domains (7) summary
      smart00216
      Location:632 → 796
      VWD; von Willebrand factor (vWF) type D domain
      smart00241
      Location:2119 → 2373
      ZP; Zona pellucida (ZP) domain
      smart00539
      Location:417 → 573
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      smart00832
      Location:836 → 910
      C8; This domain contains 8 conserved cysteine residues
      COG4886
      Location:47 → 225
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cl17735
      Location:971 → 1025
      VWC; von Willebrand factor type C domain

    2. XM_043901242.1 → XP_043757177.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    3. XM_043901268.1 → XP_043757203.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    4. XM_043901250.1 → XP_043757185.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    5. XM_043901258.1 → XP_043757193.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    6. XM_043901239.1 → XP_043757174.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Related
      ENSCESP00005005413.1, ENSCEST00005006333.1
      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    7. XM_043901288.1 → XP_043757223.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    8. XM_043901279.1 → XP_043757214.1  tubulin-specific chaperone cofactor E-like protein isoform X1

      Conserved Domains (4) summary
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cd17045
      Location:337 → 422
      Ubl_TBCEL; ubiquitin-like (Ubl) domain found in tubulin-specific chaperone cofactor E-like protein (TBCEL) and similar proteins
      pfam14580
      Location:191 → 304
      LRR_9; Leucine-rich repeat
      cd21340
      Location:53 → 298
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein
    Heading Accession and Version

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