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    LOC122313241 60S ribosomal protein L27a-3-like [ Carya illinoinensis ]

    Gene ID: 122313241, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122313241
    Gene description
    60S ribosomal protein L27a-3-like
    Locus tag
    CIPAW_06G068100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122313241 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 6 NC_056757.1 (23783558..23784238)

    Chromosome 6 - NC_056757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122312689 Neighboring gene ABC transporter B family member 26, chloroplastic Neighboring gene protein DETOXIFICATION 29-like Neighboring gene uncharacterized LOC122313467

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056757.1 Chromosome 6 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L27a-3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056757.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      23783558..23784238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043128067.1 → XP_042984001.1  60S ribosomal protein L27a-3-like

      UniProtKB/TrEMBL
      A0A922DG58, A0A922JGU0
      Conserved Domains (1) summary
      PTZ00160
      Location:1 → 146
      PTZ00160; 60S ribosomal protein L27a; Provisional
    Nucleotide Protein
    Heading Accession and Version

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