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    Aplp2 amyloid beta precursor like protein 2 [ Dipodomys spectabilis (banner-tailed kangaroo rat) ]

    Gene ID: 122122018, updated on 22-Mar-2024

    Summary

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    Gene symbol
    Aplp2
    Gene description
    amyloid beta precursor like protein 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dipodomys spectabilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
    Orthologs
    human mouse all
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    Genomic context

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    See Aplp2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current ASM1905484v1 (GCF_019054845.1) Unplaced Scaffold NW_024870878.1 (2170060..2271128)

    NW_024870878.1Genomic Context describing neighboring genes Neighboring gene nuclear factor related to kappaB binding protein Neighboring gene PR/SET domain 10 Neighboring gene 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene uncharacterized LOC122122015

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024870878 Unplaced Scaffold Reference ASM1905484v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transition metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amyloid-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dipodomys spectabilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1905484v1

    Genomic

    1. NW_024870878.1 Reference ASM1905484v1

      Range
      2170060..2271128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042696183.1 → XP_042552117.1  amyloid-like protein 2 isoform X1

      Conserved Domains (3) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:415 → 591
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:318 → 371
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    2. XM_042696186.1 → XP_042552120.1  amyloid-like protein 2 isoform X2

      Conserved Domains (3) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:415 → 591
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:318 → 371
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    3. XM_042696188.1 → XP_042552122.1  amyloid-like protein 2 isoform X3

      Conserved Domains (2) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:359 → 535
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]

    4. XM_042696189.1 → XP_042552123.1  amyloid-like protein 2 isoform X4

      Conserved Domains (2) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:359 → 535
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]

    5. XM_042696185.1 → XP_042552119.1  amyloid-like protein 2 isoform X1

      Conserved Domains (3) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:415 → 591
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:318 → 371
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    6. XM_042696187.1 → XP_042552121.1  amyloid-like protein 2 isoform X2

      Conserved Domains (3) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:415 → 591
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:318 → 371
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    7. XM_042696184.1 → XP_042552118.1  amyloid-like protein 2 isoform X1

      Conserved Domains (3) summary
      smart00006
      Location:42 → 204
      A4_EXTRA; amyloid A4
      COG4942
      Location:415 → 591
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:318 → 371
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    Nucleotide Protein
    Heading Accession and Version

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