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    Rabep1 rabaptin, RAB GTPase binding effector protein 1 [ Dipodomys spectabilis (banner-tailed kangaroo rat) ]

    Gene ID: 122108641, updated on 22-Mar-2024

    Summary

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    Gene symbol
    Rabep1
    Gene description
    rabaptin, RAB GTPase binding effector protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dipodomys spectabilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
    Orthologs
    human mouse all
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    Genomic context

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    See Rabep1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM1905484v1 (GCF_019054845.1) Unplaced Scaffold NW_024870739.1 (619507..715845)

    NW_024870739.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 232 Neighboring gene U6 spliceosomal RNA Neighboring gene SLP adaptor and CSK interacting membrane protein Neighboring gene nucleoporin 88 Neighboring gene RPA interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024870739 Unplaced Scaffold Reference ASM1905484v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab GTPase-binding effector protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dipodomys spectabilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1905484v1

    Genomic

    1. NW_024870739.1 Reference ASM1905484v1

      Range
      619507..715845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042680638.1 → XP_042536572.1  rab GTPase-binding effector protein 1 isoform X2

      Conserved Domains (2) summary
      COG1196
      Location:538 → 839
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03528
      Location:9 → 496
      Rabaptin

    2. XM_042680640.1 → XP_042536574.1  rab GTPase-binding effector protein 1 isoform X4

      Conserved Domains (2) summary
      COG1196
      Location:454 → 755
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03528
      Location:1 → 412
      Rabaptin

    3. XM_042680637.1 → XP_042536571.1  rab GTPase-binding effector protein 1 isoform X1

      Conserved Domains (2) summary
      COG1196
      Location:540 → 841
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03528
      Location:9 → 498
      Rabaptin

    4. XM_042680639.1 → XP_042536573.1  rab GTPase-binding effector protein 1 isoform X3

      Conserved Domains (2) summary
      TIGR02168
      Location:513 → 792
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam03528
      Location:9 → 498
      Rabaptin

    5. XM_042680641.1 → XP_042536575.1  rab GTPase-binding effector protein 1 isoform X5

      Conserved Domains (1) summary
      pfam03528
      Location:9 → 498
      Rabaptin

    6. XM_042680642.1 → XP_042536576.1  rab GTPase-binding effector protein 1 isoform X6

      Conserved Domains (1) summary
      pfam03528
      Location:9 → 261
      Rabaptin
    Nucleotide Protein
    Heading Accession and Version

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