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    LOC121998074 phosphomevalonate kinase, peroxisomal-like [ Zingiber officinale ]

    Gene ID: 121998074, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121998074
    Gene description
    phosphomevalonate kinase, peroxisomal-like
    Locus tag
    ZIOFF_041460
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zingiber officinale
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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    Genomic context

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    See LOC121998074 in Genome Data Viewer
    Location:
    chromosome: 6A
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Zo_v1.1 (GCF_018446385.1) 6A NC_055997.1 (129652739..129657329)

    Chromosome 6A - NC_055997.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121998071 Neighboring gene protein AE7-like Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 1 Neighboring gene F-box protein At1g67340-like Neighboring gene probable WRKY transcription factor 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055997.1 Chromosome 6A Reference Zo_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphomevalonate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in farnesyl diphosphate biosynthetic process, mevalonate pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphomevalonate kinase, peroxisomal-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zo_v1.1 Primary Assembly

    Genomic

    1. NC_055997.1 Reference Zo_v1.1 Primary Assembly

      Range
      129652739..129657329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042552818.1 → XP_042408752.1  phosphomevalonate kinase, peroxisomal-like

      Conserved Domains (1) summary
      cl40725
      Location:4 → 498
      ERG8; Phosphomevalonate kinase [Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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