U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    VPS29 VPS29 retromer complex component [ Sceloporus undulatus (fence lizard) ]

    Gene ID: 121916752, updated on 22-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    VPS29
    Gene description
    VPS29 retromer complex component
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sceloporus undulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Phrynosomatidae; Phrynosomatinae; Sceloporus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VPS29 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current SceUnd_v1.1 (GCF_019175285.1) 10 NC_056531.1 (13208456..13215834, complement)

    Chromosome 10 - NC_056531.1Genomic Context describing neighboring genes Neighboring gene arginine and serine rich coiled-coil 2 Neighboring gene kinetochore associated 1 Neighboring gene RAD9 checkpoint clamp component B Neighboring gene protein phosphatase targeting COQ7

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_056531.1 Chromosome 10 Reference SceUnd_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vacuolar protein sorting-associated protein 29

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sceloporus undulatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SceUnd_v1.1

    Genomic

    1. NC_056531.1 Reference SceUnd_v1.1

      Range
      13208456..13215834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042442185.1 → XP_042298119.1  vacuolar protein sorting-associated protein 29 isoform X3

      Conserved Domains (1) summary
      cd07394
      Location:2 → 179
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

    2. XM_042442184.1 → XP_042298118.1  vacuolar protein sorting-associated protein 29 isoform X2

      Conserved Domains (1) summary
      cd07394
      Location:6 → 183
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

    3. XM_042442182.1 → XP_042298116.1  vacuolar protein sorting-associated protein 29 isoform X1

      Conserved Domains (1) summary
      cd07394
      Location:12 → 189
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

    4. XM_042442186.1 → XP_042298120.1  vacuolar protein sorting-associated protein 29 isoform X4

      Conserved Domains (1) summary
      cd07394
      Location:2 → 179
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.