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    LOC121569510 probable phosphatase phospho1 [ Coregonus clupeaformis (lake whitefish) ]

    Gene ID: 121569510, updated on 28-May-2024

    Summary

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    Gene symbol
    LOC121569510
    Gene description
    probable phosphatase phospho1
    See related
    EnsemblRapid:ENSCCFG00005032363
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coregonus clupeaformis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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    Genomic context

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    See LOC121569510 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current ASM2061545v1 (GCF_020615455.1) 30 NC_059221.1 (51371534..51374968, complement)
    100 previous assembly ASM1839867v1 (GCF_018398675.1) 7 NC_055073.1 (41389896..41393329, complement)

    Chromosome 30 - NC_059221.1Genomic Context describing neighboring genes Neighboring gene gap junction gamma-1 protein-like Neighboring gene 116 kDa U5 small nuclear ribonucleoprotein component Neighboring gene zinc finger protein 652 Neighboring gene prohibitin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable phosphatase phospho1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2061545v1 Primary Assembly

    Genomic

    1. NC_059221.1 Reference ASM2061545v1 Primary Assembly

      Range
      51371534..51374968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041880536.2 → XP_041736470.1  probable phosphatase phospho1

      Conserved Domains (1) summary
      cl21460
      Location:37 → 272
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. XM_041880535.2 → XP_041736469.1  probable phosphatase phospho1

      Conserved Domains (1) summary
      cl21460
      Location:37 → 272
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    3. XM_041880533.2 → XP_041736467.1  probable phosphatase phospho1

      Conserved Domains (1) summary
      cl21460
      Location:37 → 272
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    4. XM_041880534.2 → XP_041736468.1  probable phosphatase phospho1

      Related
      ENSCCFP00005071639.1, ENSCCFT00005077358.1
      Conserved Domains (1) summary
      cl21460
      Location:37 → 272
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    5. XM_045209345.1 → XP_045065280.1  probable phosphatase phospho1

      Conserved Domains (1) summary
      cl21460
      Location:37 → 272
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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