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    LOC121534694 C-C motif chemokine 20-like [ Coregonus clupeaformis (lake whitefish) ]

    Gene ID: 121534694, updated on 28-May-2024

    Summary

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    Gene symbol
    LOC121534694
    Gene description
    C-C motif chemokine 20-like
    See related
    EnsemblRapid:ENSCCFG00005029869
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coregonus clupeaformis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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    Genomic context

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    See LOC121534694 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current ASM2061545v1 (GCF_020615455.1) 21 NC_059212.1 (56368909..56370064)
    100 previous assembly ASM1839867v1 (GCF_018398675.1) 21 NC_055087.1 (43902888..43904043)

    Chromosome 21 - NC_059212.1Genomic Context describing neighboring genes Neighboring gene C-C motif chemokine 4-like Neighboring gene C-C motif chemokine 7-like Neighboring gene calmodulin-regulated spectrin-associated protein 2-like Neighboring gene WD repeat-containing protein 47

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR chemokine receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chemokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to interleukin-1 IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to tumor necrosis factor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to type II interferon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lymphocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neutrophil chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of ERK1 and ERK2 cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-C motif chemokine 20-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2061545v1 Primary Assembly

    Genomic

    1. NC_059212.1 Reference ASM2061545v1 Primary Assembly

      Range
      56368909..56370064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041841281.2 → XP_041697215.1  C-C motif chemokine 20-like

      Related
      ENSCCFP00005064781.1, ENSCCFT00005070377.1
      Conserved Domains (1) summary
      pfam00048
      Location:35 → 92
      IL8; Small cytokines (intecrine/chemokine), interleukin-8 like
    Nucleotide Protein
    Heading Accession and Version

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