U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC121484100 galactoside 2-alpha-L-fucosyltransferase SEC1-like [ Vulpes lagopus (Arctic fox) ]

    Gene ID: 121484100, updated on 16-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC121484100
    Gene description
    galactoside 2-alpha-L-fucosyltransferase SEC1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes lagopus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC121484100 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM1834538v1 (GCF_018345385.1) 2 NC_054825.1 (164207567..164241552, complement)

    Chromosome 2 - NC_054825.1Genomic Context describing neighboring genes Neighboring gene Ras interacting protein 1 Neighboring gene MEF2 activating motif and SAP domain containing transcriptional regulator Neighboring gene fucosyltransferase 2 (H blood group) Neighboring gene carbonic anhydrase 11 Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene sphingosine kinase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_054825.1 Chromosome 2 Reference ASM1834538v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactoside 2-alpha-L-fucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fucosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    galactoside 2-alpha-L-fucosyltransferase SEC1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834538v1 Primary Assembly

    Genomic

    1. NC_054825.1 Reference ASM1834538v1 Primary Assembly

      Range
      164207567..164241552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041742844.1 → XP_041598778.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X1

      Conserved Domains (1) summary
      pfam01531
      Location:94 → 401
      Glyco_transf_11; Glycosyl transferase family 11

    2. XM_041742843.1 → XP_041598777.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X2

      Conserved Domains (1) summary
      pfam01531
      Location:21 → 328
      Glyco_transf_11; Glycosyl transferase family 11

    3. XM_041742841.1 → XP_041598775.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X1

      Conserved Domains (1) summary
      pfam01531
      Location:94 → 401
      Glyco_transf_11; Glycosyl transferase family 11

    4. XM_041742837.1 → XP_041598771.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X1

      Conserved Domains (1) summary
      pfam01531
      Location:94 → 401
      Glyco_transf_11; Glycosyl transferase family 11

    5. XM_041742838.1 → XP_041598772.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X1

      Conserved Domains (1) summary
      pfam01531
      Location:94 → 401
      Glyco_transf_11; Glycosyl transferase family 11

    6. XM_041742839.1 → XP_041598773.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X1

      Conserved Domains (1) summary
      pfam01531
      Location:94 → 401
      Glyco_transf_11; Glycosyl transferase family 11

    7. XM_041742840.1 → XP_041598774.1  galactoside 2-alpha-L-fucosyltransferase SEC1-like isoform X1

      Conserved Domains (1) summary
      pfam01531
      Location:94 → 401
      Glyco_transf_11; Glycosyl transferase family 11
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases