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    TFDP1 transcription factor Dp-1 [ Pyrgilauda ruficollis (rufous-necked snowfinch) ]

    Gene ID: 121352625, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TFDP1
    Gene description
    transcription factor Dp-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pyrgilauda ruficollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Pyrgilauda
    Orthologs
    human mouse all
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    Genomic context

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    See TFDP1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM1759013v1 (GCF_017590135.1) Unplaced Scaffold NW_024518096.1 (329368..366927, complement)

    NW_024518096.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 255B Neighboring gene ATPase H+/K+ transporting subunit beta Neighboring gene transmembrane and coiled-coil domains 3 Neighboring gene defective in cullin neddylation 1 domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024518096 Unplaced Scaffold Reference ASM1759013v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Dp-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pyrgilauda ruficollis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1759013v1 Primary Assembly

    Genomic

    1. NW_024518096.1 Reference ASM1759013v1 Primary Assembly

      Range
      329368..366927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041465740.1 → XP_041321674.1  transcription factor Dp-1 isoform X1

      Conserved Domains (3) summary
      cd14458
      Location:199 → 245
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 194
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:201 → 339
      DP; Transcription factor DP

    2. XM_041465743.1 → XP_041321677.1  transcription factor Dp-1 isoform X1

      Conserved Domains (3) summary
      cd14458
      Location:199 → 245
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 194
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:201 → 339
      DP; Transcription factor DP

    3. XM_041465738.1 → XP_041321672.1  transcription factor Dp-1 isoform X1

      Conserved Domains (3) summary
      cd14458
      Location:199 → 245
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 194
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:201 → 339
      DP; Transcription factor DP

    4. XM_041465744.1 → XP_041321678.1  transcription factor Dp-1 isoform X2

      Conserved Domains (3) summary
      cd14458
      Location:198 → 244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200 → 338
      DP; Transcription factor DP

    5. XM_041465737.1 → XP_041321671.1  transcription factor Dp-1 isoform X1

      Conserved Domains (3) summary
      cd14458
      Location:199 → 245
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 194
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:201 → 339
      DP; Transcription factor DP

    6. XM_041465741.1 → XP_041321675.1  transcription factor Dp-1 isoform X1

      Conserved Domains (3) summary
      cd14458
      Location:199 → 245
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 194
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:201 → 339
      DP; Transcription factor DP

    7. XM_041465739.1 → XP_041321673.1  transcription factor Dp-1 isoform X1

      Conserved Domains (3) summary
      cd14458
      Location:199 → 245
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 194
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:201 → 339
      DP; Transcription factor DP
    Nucleotide Protein
    Heading Accession and Version

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