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    p3h2 prolyl 3-hydroxylase 2 [ Xiphias gladius (swordfish) ]

    Gene ID: 120790884, updated on 8-May-2024

    Summary

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    Gene symbol
    p3h2
    Gene description
    prolyl 3-hydroxylase 2
    See related
    EnsemblRapid:ENSXGLG00000004154
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphias gladius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
    Orthologs
    human zebrafish all
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    Genomic context

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    See p3h2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current ASM1685928v1 (GCF_016859285.1) 6 NC_053405.1 (15550615..15607011)

    Chromosome 6 - NC_053405.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 50a Neighboring gene claudin-1-like Neighboring gene coiled-coil domain containing 181 Neighboring gene coproporphyrinogen oxidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053405.1 Chromosome 6 Reference ASM1685928v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-proline 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolyl 3-hydroxylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1685928v1 Primary Assembly

    Genomic

    1. NC_053405.1 Reference ASM1685928v1 Primary Assembly

      Range
      15550615..15607011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040128851.1 → XP_039984785.1  prolyl 3-hydroxylase 2

      Related
      ENSXGLP00000011181.1, ENSXGLT00000011614.1
      Conserved Domains (1) summary
      smart00702
      Location:445 → 643
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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