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    TBP TATA-box binding protein [ Pteropus giganteus (Indian flying fox) ]

    Gene ID: 120618243, updated on 30-Mar-2024

    Summary

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    Gene symbol
    TBP
    Gene description
    TATA-box binding protein
    See related
    EnsemblRapid:ENSPGIG00000005658
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus giganteus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
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    Genomic context

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    See TBP in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024340700.1 (7333392..7345860)

    NW_024340700.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120618229 Neighboring gene proteasome 20S subunit beta 1 Neighboring gene 5S ribosomal RNA Neighboring gene programmed cell death 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024340700 Unplaced Scaffold Reference Ma_sr-lr_union100

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA-box-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ma_sr-lr_union100

    Genomic

    1. NW_024340700.1 Reference Ma_sr-lr_union100

      Range
      7333392..7345860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039882231.1 → XP_039738165.1  TATA-box-binding protein

      Conserved Domains (1) summary
      PLN00062
      Location:154 → 330
      PLN00062; TATA-box-binding protein; Provisional

    2. XM_039882221.1 → XP_039738155.1  TATA-box-binding protein

      Related
      ENSPGIP00000004840.1, ENSPGIT00000007415.1
      Conserved Domains (1) summary
      PLN00062
      Location:154 → 330
      PLN00062; TATA-box-binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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