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    slc35b4 solute carrier family 35 member B4 [ Pimephales promelas (fathead minnow) ]

    Gene ID: 120471966, updated on 21-Mar-2024

    Summary

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    Gene symbol
    slc35b4
    Gene description
    solute carrier family 35 member B4
    Locus tag
    F2P79_007579
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pimephales promelas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
    Orthologs
    human zebrafish all
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    Genomic context

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    See slc35b4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121987.1 (20306660..20312432)

    NW_024121987.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 3b Neighboring gene small nucleolar RNA SNORA53 Neighboring gene lactate dehydrogenase Bb Neighboring gene golgi transport 1Bb Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 3b Neighboring gene G protein-coupled receptor 22b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024121987 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-N-acetylglucosamine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-xylose transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-xylose and UDP-N-acetylglucosamine transporter
    Names
    Nucleotide Sugar TransPorter family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EPA_FHM_2.0 Primary Assembly

    Genomic

    1. NW_024121987.1 Reference EPA_FHM_2.0 Primary Assembly

      Range
      20306660..20312432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039661907.1 → XP_039517841.1  UDP-xylose and UDP-N-acetylglucosamine transporter

      Conserved Domains (1) summary
      pfam08449
      Location:2 → 314
      UAA; UAA transporter family
    Nucleotide Protein
    Heading Accession and Version

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