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    LOC120335756 tryptophan 5-hydroxylase 1-like [ Styela clava ]

    Gene ID: 120335756, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120335756
    Gene description
    tryptophan 5-hydroxylase 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Styela clava
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Styelidae; Styela
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    Genomic context

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    See LOC120335756 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM1312258v2 (GCF_013122585.1) Unplaced Scaffold NW_024102834.1 (20824828..20836328)

    NW_024102834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120335728 Neighboring gene uncharacterized LOC120335778 Neighboring gene uncharacterized LOC120335754 Neighboring gene uncharacterized LOC120335764 Neighboring gene uncharacterized LOC120335807

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024102834 Unplaced Scaffold Reference ASM1312258v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phenylalanine 4-monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tyrosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tryptophan 5-hydroxylase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Styela clava Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1312258v2 Primary Assembly

    Genomic

    1. NW_024102834.1 Reference ASM1312258v2 Primary Assembly

      Range
      20824828..20836328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039403375.1 → XP_039259309.1  tryptophan 5-hydroxylase 1-like

      Conserved Domains (2) summary
      cl01244
      Location:124 → 430
      arom_aa_hydroxylase; Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan ...
      cl09141
      Location:56 → 113
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    Nucleotide Protein
    Heading Accession and Version

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