U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC120195509 RING-H2 finger protein ATL78-like [ Hibiscus syriacus ]

    Gene ID: 120195509, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120195509
    Gene description
    RING-H2 finger protein ATL78-like
    Locus tag
    F3Y22_tig00117016pilonHSYRG00486
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120195509 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063525.1 (4725012..4725560, complement)

    NW_024063525.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120195481 Neighboring gene RING-H2 finger protein ATL78-like Neighboring gene RING-H2 finger protein ATL78-like Neighboring gene RING-H2 finger protein ATL78-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_024063525 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING-H2 finger protein ATL78-like
    Names
    putative RING zinc finger protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063525.1 Reference ASM638163v2 Primary Assembly

      Range
      4725012..4725560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039197514.1 → XP_039053445.1  RING-H2 finger protein ATL78-like

      UniProtKB/TrEMBL
      A0A6A2WCF0
      Conserved Domains (1) summary
      cd16454
      Location:121 → 163
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases