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    LOC120195138 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like [ Hibiscus syriacus ]

    Gene ID: 120195138, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120195138
    Gene description
    phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like
    Locus tag
    F3Y22_tig00117005pilonHSYRG00265
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120195138 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063519.1 (1764150..1767882)

    NW_024063519.1Genomic Context describing neighboring genes Neighboring gene transport inhibitor response 1-like protein Neighboring gene serine/threonine-protein kinase PEPKR2-like Neighboring gene protein DMR6-LIKE OXYGENASE 1-like Neighboring gene putative clathrin assembly protein At4g40080

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063519 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoribosylaminoimidazolesuccinocarboxamide synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 'de novo' IMP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063519.1 Reference ASM638163v2 Primary Assembly

      Range
      1764150..1767882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039197239.1 → XP_039053170.1  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like

      Conserved Domains (1) summary
      PLN02544
      Location:36 → 395
      PLN02544; phosphoribosylaminoimidazole-succinocarboxamide synthase
    Nucleotide Protein
    Heading Accession and Version

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