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    LOC120195130 tRNA modification GTPase MnmE-like [ Hibiscus syriacus ]

    Gene ID: 120195130, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120195130
    Gene description
    tRNA modification GTPase MnmE-like
    Locus tag
    F3Y22_tig00117005pilonHSYRG00366
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120195130 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063519.1 (2450940..2454375, complement)

    NW_024063519.1Genomic Context describing neighboring genes Neighboring gene mavicyanin-like Neighboring gene uncharacterized LOC120195062 Neighboring gene sulfate transporter 1.2-like Neighboring gene aspartic proteinase-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063519 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA modification GTPase MnmE-like
    Names
    sulfate transporter 1.3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063519.1 Reference ASM638163v2 Primary Assembly

      Range
      2450940..2454375 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039197231.1 → XP_039053162.1  tRNA modification GTPase MnmE-like

      UniProtKB/TrEMBL
      A0A6A2WQ37
      Conserved Domains (1) summary
      PRK05291
      Location:112 → 588
      trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
    Nucleotide Protein
    Heading Accession and Version

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