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    LOC120090949 B3 domain-containing transcription repressor VAL2 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120090949, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120090949
    Gene description
    B3 domain-containing transcription repressor VAL2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120090949 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 11 NC_052359.1 (49100864..49109921)

    Chromosome 11 - NC_052359.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase IRK Neighboring gene uncharacterized LOC120090465 Neighboring gene pentatricopeptide repeat-containing protein At1g09900-like Neighboring gene elongation factor P

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052359.1 Chromosome 11 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B3 domain-containing transcription repressor VAL2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052359.1 Reference ASM972705v1

      Range
      49100864..49109921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039048674.1 → XP_038904602.1  B3 domain-containing transcription repressor VAL2 isoform X4

      Conserved Domains (2) summary
      cd10017
      Location:275 → 376
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:553 → 595
      zf-CW; CW-type Zinc Finger

    2. XM_039048664.1 → XP_038904592.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    3. XM_039048665.1 → XP_038904593.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    4. XM_039048668.1 → XP_038904596.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    5. XM_039048667.1 → XP_038904595.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    6. XM_039048669.1 → XP_038904597.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    7. XM_039048666.1 → XP_038904594.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    8. XM_039048663.1 → XP_038904591.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    9. XM_039048673.1 → XP_038904601.1  B3 domain-containing transcription repressor VAL2 isoform X3

      Conserved Domains (2) summary
      cd10017
      Location:289 → 390
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:567 → 609
      zf-CW; CW-type Zinc Finger

    10. XM_039048670.1 → XP_038904598.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    11. XM_039048671.1 → XP_038904599.1  B3 domain-containing transcription repressor VAL2 isoform X1

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:592 → 634
      zf-CW; CW-type Zinc Finger

    12. XM_039048672.1 → XP_038904600.1  B3 domain-containing transcription repressor VAL2 isoform X2

      Conserved Domains (2) summary
      cd10017
      Location:314 → 415
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:586 → 628
      zf-CW; CW-type Zinc Finger

    RNA

    1. XR_005485615.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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