U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC120090344 uncharacterized LOC120090344 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120090344, updated on 7-Dec-2023

    Summary

    Gene symbol
    LOC120090344
    Gene description
    uncharacterized LOC120090344
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC120090344 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 11 NC_052359.1 (83540916..83551206)

    Chromosome 11 - NC_052359.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120090910 Neighboring gene uncharacterized LOC120092011 Neighboring gene protein ALTERED XYLOGLUCAN 4-like Neighboring gene alpha-dioxygenase 1-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_052359.1 Chromosome 11 Reference ASM972705v1

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein LOC120090344

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052359.1 Reference ASM972705v1

      Range
      83540916..83551206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039047934.1XP_038903862.1  uncharacterized protein LOC120090344 isoform X1

      Conserved Domains (2) summary
      smart00509
      Location:327406
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:35164
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    2. XM_039047940.1XP_038903868.1  uncharacterized protein LOC120090344 isoform X3

      Conserved Domains (2) summary
      smart00509
      Location:302381
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:35164
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    3. XM_039047935.1XP_038903863.1  uncharacterized protein LOC120090344 isoform X1

      Conserved Domains (2) summary
      smart00509
      Location:327406
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:35164
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    4. XM_039047937.1XP_038903865.1  uncharacterized protein LOC120090344 isoform X2

      Conserved Domains (2) summary
      smart00509
      Location:304383
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:15141
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    5. XM_039047938.1XP_038903866.1  uncharacterized protein LOC120090344 isoform X2

      Conserved Domains (2) summary
      smart00509
      Location:304383
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:15141
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    6. XM_039047939.1XP_038903867.1  uncharacterized protein LOC120090344 isoform X2

      Conserved Domains (2) summary
      smart00509
      Location:304383
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:15141
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    7. XM_039047936.1XP_038903864.1  uncharacterized protein LOC120090344 isoform X2

      Conserved Domains (2) summary
      smart00509
      Location:304383
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:15141
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...