U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC120086413 uncharacterized LOC120086413 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120086413, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120086413
    Gene description
    uncharacterized LOC120086413
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120086413 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 9 NC_052357.1 (59900554..59904224, complement)

    Chromosome 9 - NC_052357.1Genomic Context describing neighboring genes Neighboring gene filament-like plant protein 4 Neighboring gene auxin-induced protein 6B-like Neighboring gene auxin response factor 5 Neighboring gene uncharacterized LOC120086120

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052357.1 Chromosome 9 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC120086413

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052357.1 Reference ASM972705v1

      Range
      59900554..59904224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039043049.1 → XP_038898977.1  uncharacterized protein LOC120086413 isoform X2

      Conserved Domains (1) summary
      cl04309
      Location:9 → 82
      RNAP_Rpb7_N_like; This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of the Rpb7 subunit of eukaryotic RNA polymerase (RNAP) II and its homologs, Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III, and RpoE (subunit E) of archaeal RNAP. ...

    2. XM_039043047.1 → XP_038898975.1  uncharacterized protein LOC120086413 isoform X1

      Conserved Domains (1) summary
      cl04309
      Location:9 → 82
      RNAP_Rpb7_N_like; This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of the Rpb7 subunit of eukaryotic RNA polymerase (RNAP) II and its homologs, Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III, and RpoE (subunit E) of archaeal RNAP. ...

    3. XM_039043050.1 → XP_038898978.1  uncharacterized protein LOC120086413 isoform X3

      Conserved Domains (2) summary
      COG1095
      Location:5 → 180
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cl04309
      Location:9 → 82
      RNAP_Rpb7_N_like; This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of the Rpb7 subunit of eukaryotic RNA polymerase (RNAP) II and its homologs, Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III, and RpoE (subunit E) of archaeal RNAP. ...

    RNA

    1. XR_005484221.1 RNA Sequence

    2. XR_005484220.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases