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    LOC120082600 squamosa promoter-binding-like protein 13A [ Benincasa hispida (wax gourd) ]

    Gene ID: 120082600, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120082600
    Gene description
    squamosa promoter-binding-like protein 13A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120082600 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 8 NC_052356.1 (43476394..43480241, complement)

    Chromosome 8 - NC_052356.1Genomic Context describing neighboring genes Neighboring gene truncated transcription factor CAULIFLOWER D-like Neighboring gene uncharacterized LOC120084063 Neighboring gene SUMO-activating enzyme subunit 1B-1-like Neighboring gene heavy metal-associated isoprenylated plant protein 7-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052356.1 Chromosome 8 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 13A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052356.1 Reference ASM972705v1

      Range
      43476394..43480241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039037848.1 → XP_038893776.1  squamosa promoter-binding-like protein 13A

      Conserved Domains (1) summary
      pfam03110
      Location:25 → 99
      SBP; SBP domain

    2. XM_039037847.1 → XP_038893775.1  squamosa promoter-binding-like protein 13A

      Conserved Domains (1) summary
      pfam03110
      Location:25 → 99
      SBP; SBP domain

    3. XM_039037846.1 → XP_038893774.1  squamosa promoter-binding-like protein 13A

      Conserved Domains (1) summary
      pfam03110
      Location:25 → 99
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version

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