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    LOC120082077 zinc finger protein CONSTANS-LIKE 16-like [ Benincasa hispida (wax gourd) ]

    Gene ID: 120082077, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120082077
    Gene description
    zinc finger protein CONSTANS-LIKE 16-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120082077 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 7 NC_052355.1 (40412692..40414215, complement)

    Chromosome 7 - NC_052355.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120081288 Neighboring gene LOB domain-containing protein 40-like Neighboring gene homocysteine S-methyltransferase 1 Neighboring gene 3-ketoacyl-CoA synthase 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052355.1 Chromosome 7 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 16-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052355.1 Reference ASM972705v1

      Range
      40412692..40414215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039037298.1 → XP_038893226.1  zinc finger protein CONSTANS-LIKE 16-like

      Conserved Domains (2) summary
      cd19821
      Location:19 → 62
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:346 → 389
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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