U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC120076635 hippocampus abundant transcript 1 protein-like [ Benincasa hispida (wax gourd) ]

    Gene ID: 120076635, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120076635
    Gene description
    hippocampus abundant transcript 1 protein-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120076635 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 4 NC_052352.1 (2629204..2640184, complement)

    Chromosome 4 - NC_052352.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene hippocampus abundant transcript 1 protein-like Neighboring gene hippocampus abundant transcript 1 protein-like Neighboring gene hippocampus abundant transcript 1 protein-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052352.1 Chromosome 4 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hippocampus abundant transcript 1 protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052352.1 Reference ASM972705v1

      Range
      2629204..2640184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039030511.1 → XP_038886439.1  hippocampus abundant transcript 1 protein-like isoform X1

      Conserved Domains (1) summary
      cd17330
      Location:10 → 420
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    2. XM_039030513.1 → XP_038886441.1  hippocampus abundant transcript 1 protein-like isoform X3

      Conserved Domains (1) summary
      cd17330
      Location:10 → 410
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    3. XM_039030512.1 → XP_038886440.1  hippocampus abundant transcript 1 protein-like isoform X2

      Conserved Domains (1) summary
      cd17330
      Location:10 → 421
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases