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    LOC120063842 polypeptide N-acetylgalactosaminyltransferase 5-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120063842, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120063842
    Gene description
    polypeptide N-acetylgalactosaminyltransferase 5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120063842 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 19 NC_052325.1 (40146501..40155757, complement)

    Chromosome 19 - NC_052325.1Genomic Context describing neighboring genes Neighboring gene activin receptor type-1C-like Neighboring gene cytohesin 1 interacting protein Neighboring gene glycerol-3-phosphate dehydrogenase, mitochondrial-like Neighboring gene nuclear receptor subfamily 4 group A member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052325.1 Chromosome 19 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052325.1 Reference SaNama_1.0 Primary Assembly

      Range
      40146501..40155757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039014157.1 → XP_038870085.1  polypeptide N-acetylgalactosaminyltransferase 5-like

      UniProtKB/TrEMBL
      A0A8U1F5T0
      Conserved Domains (2) summary
      cd02510
      Location:412 → 715
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:725 → 844
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    Nucleotide Protein
    Heading Accession and Version

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