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    LOC119890313 APAF1 interacting protein [ Micropterus salmoides (largemouth bass) ]

    Gene ID: 119890313, updated on 21-Mar-2024

    Summary

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    Gene symbol
    LOC119890313
    Gene description
    APAF1 interacting protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Micropterus salmoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
    Orthologs
    human zebrafish all
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    Genomic context

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    See LOC119890313 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024044348.1 (8259157..8270837)

    NW_024044348.1Genomic Context describing neighboring genes Neighboring gene cell wall protein RBR3-like Neighboring gene solute carrier family 1 member 2a Neighboring gene leucine rich repeat containing 4C, genome duplicate b Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024044348 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylthioribulose 1-phosphate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-methionine salvage from methylthioadenosine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylthioribulose-1-phosphate dehydratase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1485139v1 Primary Assembly

    Genomic

    1. NW_024044348.1 Reference ASM1485139v1 Primary Assembly

      Range
      8259157..8270837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038701514.1 → XP_038557442.1  methylthioribulose-1-phosphate dehydratase

      Conserved Domains (1) summary
      TIGR03328
      Location:30 → 228
      salvage_mtnB; methylthioribulose-1-phosphate dehydratase
    Nucleotide Protein
    Heading Accession and Version

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