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    rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1190543, updated on 3-Apr-2024

    Summary

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    Gene symbol
    rsmD
    Gene description
    16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
    Locus tag
    VP_RS14640
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP2957
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    Genomic context

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    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (3160972..3161571)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene permease-like cell division protein FtsX Neighboring gene cell division ATP-binding protein FtsE Neighboring gene signal recognition particle-docking protein FtsY Neighboring gene DUF1145 domain-containing protein Neighboring gene YhgN family NAAT transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Properties of small rRNA methyltransferase RsmD: mutational and kinetic study. Sergeeva OV, et al. RNA, 2012 Jun. PMID 22535590, Free PMC Article
    2. Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure. Lesnyak DV, et al. J Biol Chem, 2007 Feb 23. PMID 17189261, Free PMC Article
    3. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    4. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
    WP_005455148.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      3160972..3161571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005455148.1 MULTISPECIES: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Vibrio]

      See identical proteins and their annotated locations for WP_005455148.1

      UniProtKB/TrEMBL
      A0A0F2IJ21, Q87KM0
      Conserved Domains (1) summary
      cl17173
      Location:12 → 196
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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