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    oppB oligopeptide ABC transporter permease OppB [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1188851, updated on 26-Apr-2024

    Summary

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    Gene symbol
    oppB
    Gene description
    oligopeptide ABC transporter permease OppB
    Locus tag
    VP_RS06530
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP1346
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    Genomic context

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    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (1427157..1428077, complement)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene oligopeptide/dipeptide ABC transporter ATP-binding protein Neighboring gene ABC transporter permease subunit Neighboring gene peptide ABC transporter substrate-binding protein Neighboring gene M20/M25/M40 family metallo-hydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Between computational predictions and high-throughput transcriptional profiling: in depth expression analysis of the OppB trans-membrane subunit of Escherichia coli OppABCDF oligopeptide transporter. Masulis IS, et al. Res Microbiol, 2020 Mar. PMID 31704256
    2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    3. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    oligopeptide ABC transporter permease OppB
    WP_005454907.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      1427157..1428077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005454907.1 MULTISPECIES: oligopeptide ABC transporter permease OppB [Vibrio]

      See identical proteins and their annotated locations for WP_005454907.1

      UniProtKB/TrEMBL
      A0A0L8TA87, Q87Q04
      Conserved Domains (1) summary
      PRK09471
      Location:1 → 305
      oppB; oligopeptide ABC transporter permease OppB
    Nucleotide Protein
    Heading Accession and Version

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