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    sgca sarcoglycan, alpha [ Colossoma macropomum (tambaqui) ]

    Gene ID: 118809797, updated on 20-Mar-2024

    Summary

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    Gene symbol
    sgca
    Gene description
    sarcoglycan, alpha
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colossoma macropomum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
    Orthologs
    zebrafish all
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    Genomic context

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    See sgca in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494790.1 (39763610..39775871)

    NW_023494790.1Genomic Context describing neighboring genes Neighboring gene dicarbonyl/L-xylulose reductase Neighboring gene RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023494790 Unplaced Scaffold Reference Colossoma_macropomum

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Colossoma_macropomum

    Genomic

    1. NW_023494790.1 Reference Colossoma_macropomum

      Range
      39763610..39775871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036573372.1 → XP_036429265.1  alpha-sarcoglycan

      Conserved Domains (1) summary
      pfam05510
      Location:12 → 351
      Sarcoglycan_2; Sarcoglycan alpha/epsilon
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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