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    UBTF upstream binding transcription factor [ Myotis myotis ]

    Gene ID: 118671413, updated on 30-Mar-2024

    Summary

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    Gene symbol
    UBTF
    Gene description
    upstream binding transcription factor
    Locus tag
    mMyoMyo1_020132
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis myotis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
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    Genomic context

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    See UBTF in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current mMyoMyo1.p (GCF_014108235.1) Unplaced Scaffold NW_023416321.1 (14316773..14331100)

    NW_023416321.1Genomic Context describing neighboring genes Neighboring gene high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A-like Neighboring gene uncharacterized LOC118672238 Neighboring gene ataxin 7 like 3 Neighboring gene transmembrane and ubiquitin like domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023416321 Unplaced Scaffold Reference mMyoMyo1.p Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    nucleolar transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Myotis myotis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMyoMyo1.p Primary Assembly

    Genomic

    1. NW_023416321.1 Reference mMyoMyo1.p Primary Assembly

      Range
      14316773..14331100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036339572.1 → XP_036195465.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A7J7T9U0
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5

    2. XM_036339569.1 → XP_036195462.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A7J7T9U0
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5

    3. XM_036339574.1 → XP_036195467.1  nucleolar transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A7J7T9A4
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:442 → 525
      HMG_box_5; HMG (high mobility group) box 5

    4. XM_036339570.1 → XP_036195463.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A7J7T9U0
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5

    5. XM_036339573.1 → XP_036195466.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A7J7T9U0
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5

    6. XM_036339571.1 → XP_036195464.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A7J7T9U0
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5

    7. XM_036339575.1 → XP_036195468.1  nucleolar transcription factor 1 isoform X3

      Conserved Domains (3) summary
      cd01390
      Location:284 → 347
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:356 → 439
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:1 → 56
      HMG_box; HMG (high mobility group) box

    8. XM_036339577.1 → XP_036195470.1  nucleolar transcription factor 1 isoform X4

      UniProtKB/TrEMBL
      A0A7J7T9B6, A0A7J7TA26
      Conserved Domains (3) summary
      cd01390
      Location:407 → 470
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    9. XM_036339579.1 → XP_036195472.1  nucleolar transcription factor 1 isoform X6

      UniProtKB/TrEMBL
      A0A7J7T988, A0A7J7TA26
      Conserved Domains (3) summary
      cd01390
      Location:370 → 433
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:442 → 525
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    10. XM_036339578.1 → XP_036195471.1  nucleolar transcription factor 1 isoform X5

      Conserved Domains (2) summary
      cd01390
      Location:249 → 312
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:321 → 404
      HMG_box_5; HMG (high mobility group) box 5
    Nucleotide Protein
    Heading Accession and Version

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