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    LOC118612938 HLA class II histocompatibility antigen, DR beta 4 chain-like [ Rousettus aegyptiacus (Egyptian rousette) ]

    Gene ID: 118612938, updated on 30-Mar-2024

    Summary

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    Gene symbol
    LOC118612938
    Gene description
    HLA class II histocompatibility antigen, DR beta 4 chain-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rousettus aegyptiacus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
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    Genomic context

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    See LOC118612938 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416284.1 (91071303..91116124)

    NW_023416284.1Genomic Context describing neighboring genes Neighboring gene H-2 class II histocompatibility antigen, A-U alpha chain Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain Neighboring gene 5S ribosomal RNA Neighboring gene HLA class II histocompatibility antigen, DQ alpha 2 chain Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023416284 Unplaced Scaffold Reference mRouAeg1.p

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables MHC class II protein complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptide antigen assembly with MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DR beta 4 chain-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRouAeg1.p

    Genomic

    1. NW_023416284.1 Reference mRouAeg1.p

      Range
      91071303..91116124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036235197.1 → XP_036091090.1  LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DR beta 4 chain-like

      Conserved Domains (2) summary
      cd00096
      Location:49 → 57
      Ig; Ig strand A [structural motif]
      cl11960
      Location:47 → 137
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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