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    sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Etheostoma cragini (Arkansas darter) ]

    Gene ID: 117955336, updated on 19-Mar-2024

    Summary

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    Gene symbol
    sgcd
    Gene description
    sarcoglycan, delta (dystrophin-associated glycoprotein)
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Etheostoma cragini
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
    Orthologs
    human zebrafish all
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    Genomic context

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    See sgcd in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current CSU_Ecrag_1.0 (GCF_013103735.1) 13 NC_048419.1 (24677336..24934036)

    Chromosome 13 - NC_048419.1Genomic Context describing neighboring genes Neighboring gene aromatic-L-amino-acid decarboxylase-like Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC117955350 Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048419.1 Chromosome 13 Reference CSU_Ecrag_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CSU_Ecrag_1.0

    Genomic

    1. NC_048419.1 Reference CSU_Ecrag_1.0

      Range
      24677336..24934036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034889770.1 → XP_034745661.1  delta-sarcoglycan isoform X2

      Conserved Domains (1) summary
      pfam04790
      Location:22 → 279
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    2. XM_034889767.1 → XP_034745658.1  delta-sarcoglycan isoform X2

      Conserved Domains (1) summary
      pfam04790
      Location:22 → 279
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    3. XM_034889768.1 → XP_034745659.1  delta-sarcoglycan isoform X2

      Conserved Domains (1) summary
      pfam04790
      Location:22 → 279
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    4. XM_034889766.1 → XP_034745657.1  delta-sarcoglycan isoform X1

      Conserved Domains (1) summary
      pfam04790
      Location:23 → 280
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

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