U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC117840528 cytochrome P450 84A1 [ Setaria viridis ]

    Gene ID: 117840528, updated on 24-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC117840528
    Gene description
    cytochrome P450 84A1
    Locus tag
    SEVIR_9G193800v2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria viridis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC117840528 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Setaria_viridis_v2.0 (GCF_005286985.1) 9 NC_048271.1 (13717118..13721494)

    Chromosome 9 - NC_048271.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117840971 Neighboring gene uncharacterized LOC117840258 Neighboring gene transmembrane and coiled-coil domain-containing protein 4-like Neighboring gene zinc finger CCCH domain-containing protein 44-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_048271.1 Chromosome 9 Reference Setaria_viridis_v2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome P450 84A1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_viridis_v2.0 Primary Assembly

    Genomic

    1. NC_048271.1 Reference Setaria_viridis_v2.0 Primary Assembly

      Range
      13717118..13721494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034721040.1 → XP_034576931.1  cytochrome P450 84A1

      UniProtKB/TrEMBL
      A0A4U6SVN7
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases