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    LOC117417705 nuclear factor NF-kappa-B p100 subunit-like [ Acipenser ruthenus (sterlet) ]

    Gene ID: 117417705, updated on 26-Oct-2023

    Summary

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    Gene symbol
    LOC117417705
    Gene description
    nuclear factor NF-kappa-B p100 subunit-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acipenser ruthenus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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    Genomic context

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    See LOC117417705 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 13 NC_081201.1 (32579419..32613942)
    101 previous assembly ASM1064508v1 (GCF_010645085.1) 13 NC_048335.1 (7263169..7285198, complement)

    Chromosome 13 - NC_081201.1Genomic Context describing neighboring genes Neighboring gene multimerin-2-like Neighboring gene synuclein-like Neighboring gene glutamate dehydrogenase, mitochondrial Neighboring gene PH and SEC7 domain-containing protein 1-like Neighboring gene elongation of very long chain fatty acids protein 6-like Neighboring gene AIF family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in non-canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to cytokine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear factor NF-kappa-B p100 subunit-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAciRut3.2 maternal haplotype Primary Assembly

    Genomic

    1. NC_081201.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

      Range
      32579419..32613942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058985157.1 → XP_058841140.1  nuclear factor NF-kappa-B p100 subunit-like isoform X1

    2. XM_034925767.2 → XP_034781658.2  nuclear factor NF-kappa-B p100 subunit-like isoform X2

    3. XM_058985159.1 → XP_058841142.1  nuclear factor NF-kappa-B p100 subunit-like isoform X3

    4. XM_058985161.1 → XP_058841144.1  nuclear factor NF-kappa-B p100 subunit-like isoform X4

    5. XM_034029913.3 → XP_033885804.3  nuclear factor NF-kappa-B p100 subunit-like isoform X3

    6. XM_034029915.3 → XP_033885806.3  nuclear factor NF-kappa-B p100 subunit-like isoform X4

    7. XM_058985158.1 → XP_058841141.1  nuclear factor NF-kappa-B p100 subunit-like isoform X3

    8. XM_058985160.1 → XP_058841143.1  nuclear factor NF-kappa-B p100 subunit-like isoform X4

    Nucleotide Protein
    Heading Accession and Version

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