U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    supt5h SPT5 homolog, DSIF elongation factor subunit [ Periophthalmus magnuspinnatus ]

    Gene ID: 117380081, updated on 22-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    supt5h
    Gene description
    SPT5 homolog, DSIF elongation factor subunit
    See related
    EnsemblRapid:ENSPMGG00005000167
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Periophthalmus magnuspinnatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Periophthalmus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See supt5h in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_04 current fPerMag1.2.pri (GCF_009829125.3) 13 NC_047138.1 (32377141..32394218)
    100 previous assembly fPerMag1.pri (GCF_009829125.1) 13 NC_047138.1 (32377149..32394165)

    Chromosome 13 - NC_047138.1Genomic Context describing neighboring genes Neighboring gene otolin-1 Neighboring gene TP53 regulated inhibitor of apoptosis 1 Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 14Ab

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DSIF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription elongation factor SPT5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_009829125.3-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPerMag1.2.pri

    Genomic

    1. NC_047138.1 Reference fPerMag1.2.pri

      Range
      32377141..32394218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055226317.1 → XP_055082292.1  transcription elongation factor SPT5

      Related
      ENSPMGP00005000261.1, ENSPMGT00005000308.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.