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    fubp1 far upstream element binding protein 1 [ Amblyraja radiata (thorny skate) ]

    Gene ID: 116978041, updated on 18-Mar-2024

    Summary

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    Gene symbol
    fubp1
    Gene description
    far upstream element binding protein 1
    See related
    EnsemblRapid:ENSARAG00005006693
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amblyraja radiata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja
    Orthologs
    human mouse all
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    Genomic context

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    See fubp1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100.20210331 current sAmbRad1.1.pri (GCF_010909765.2) 10 NC_045965.1 (62791292..62813017, complement)

    Chromosome 10 - NC_045965.1Genomic Context describing neighboring genes Neighboring gene nexilin F-actin binding protein Neighboring gene uncharacterized LOC116978040 Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene uncharacterized LOC116978043

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045965.1 Chromosome 10 Reference sAmbRad1.1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    far upstream element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amblyraja radiata Updated Annotation Release 100.20210331

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sAmbRad1.1.pri

    Genomic

    1. NC_045965.1 Reference sAmbRad1.1.pri

      Range
      62791292..62813017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033029047.1 → XP_032884938.1  far upstream element-binding protein 1 isoform X3

      Related
      ENSARAP00005010088.1, ENSARAT00005010694.1
      Conserved Domains (5) summary
      pfam09005
      Location:633 → 649
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:130 → 204
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:217 → 287
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:312 → 379
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:414 → 485
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    2. XM_033029046.1 → XP_032884937.1  far upstream element-binding protein 1 isoform X2

      Conserved Domains (5) summary
      pfam09005
      Location:663 → 679
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:118 → 192
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:205 → 275
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:300 → 367
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:402 → 473
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    3. XM_033029044.1 → XP_032884935.1  far upstream element-binding protein 1 isoform X1

      Related
      ENSARAP00005010066.1, ENSARAT00005010670.1
      Conserved Domains (5) summary
      pfam09005
      Location:675 → 691
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:130 → 204
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:217 → 287
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:312 → 379
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:414 → 485
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    4. XM_033029048.1 → XP_032884939.1  far upstream element-binding protein 1 isoform X4

      Related
      ENSARAP00005010061.1, ENSARAT00005010665.1
      Conserved Domains (5) summary
      pfam09005
      Location:604 → 620
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:59 → 133
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:146 → 216
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:241 → 308
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:343 → 414
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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