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    VPS54 VPS54 subunit of GARP complex [ Phocoena sinus (vaquita) ]

    Gene ID: 116764106, updated on 18-Mar-2024

    Summary

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    Gene symbol
    VPS54
    Gene description
    VPS54 subunit of GARP complex
    See related
    Ensembl:ENSPSNG00000015574
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phocoena sinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
    Orthologs
    human mouse all
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    Genomic context

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    See VPS54 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    100 current mPhoSin1.pri (GCF_008692025.1) 13 NC_045775.1 (54205793..54371390, complement)

    Chromosome 13 - NC_045775.1Genomic Context describing neighboring genes Neighboring gene 14 kDa phosphohistidine phosphatase-like Neighboring gene uncharacterized LOC116764110 Neighboring gene UDP-glucose pyrophosphorylase 2 Neighboring gene pellino E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC116764392 Neighboring gene uncharacterized LOC116764703

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045775.1 Chromosome 13 Reference mPhoSin1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPhoSin1.pri

    Genomic

    1. NC_045775.1 Reference mPhoSin1.pri

      Range
      54205793..54371390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032652359.1 → XP_032508250.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    2. XM_032652357.1 → XP_032508248.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    3. XM_032652360.1 → XP_032508251.1  vacuolar protein sorting-associated protein 54 isoform X2

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:724 → 855
      Vps54; Vps54-like protein

    4. XM_032652355.1 → XP_032508246.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    5. XM_032652356.1 → XP_032508247.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    6. XM_032652358.1 → XP_032508249.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    7. XM_032652366.1 → XP_032508257.1  vacuolar protein sorting-associated protein 54 isoform X5

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:633 → 764
      Vps54; Vps54-like protein

    8. XM_032652367.1 → XP_032508258.1  vacuolar protein sorting-associated protein 54 isoform X6

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:570 → 701
      Vps54; Vps54-like protein

    9. XM_032652364.1 → XP_032508255.1  vacuolar protein sorting-associated protein 54 isoform X4

      UniProtKB/TrEMBL
      A0A8C9CGF9, A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:724 → 855
      Vps54; Vps54-like protein

    10. XM_032652361.1 → XP_032508252.1  vacuolar protein sorting-associated protein 54 isoform X3

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    11. XM_032652365.1 → XP_032508256.1  vacuolar protein sorting-associated protein 54 isoform X4

      UniProtKB/TrEMBL
      A0A8C9CGF9, A0A8C9CGH8
      Related
      ENSPSNP00000021863.1, ENSPSNT00000024601.1
      Conserved Domains (1) summary
      pfam07928
      Location:724 → 855
      Vps54; Vps54-like protein

    12. XM_032652363.1 → XP_032508254.1  vacuolar protein sorting-associated protein 54 isoform X3

      UniProtKB/TrEMBL
      A0A8C9CGH8
      Conserved Domains (1) summary
      pfam07928
      Location:736 → 867
      Vps54; Vps54-like protein

    13. XM_032652368.1 → XP_032508259.1  vacuolar protein sorting-associated protein 54 isoform X7

      Conserved Domains (1) summary
      pfam07928
      Location:736 → 781
      Vps54; Vps54-like protein
    Nucleotide Protein
    Heading Accession and Version

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