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    PARVB parvin beta [ Aythya fuligula (tufted duck) ]

    Gene ID: 116502039, updated on 25-Jun-2024

    Summary

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    Gene symbol
    PARVB
    Gene description
    parvin beta
    See related
    EnsemblRapid:ENSAFUG00000017568
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aythya fuligula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
    Orthologs
    human mouse all
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    Genomic context

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    See PARVB in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current bAytFul2.pri (GCF_009819795.1) 1 NC_045559.1 (73709576..73795981, complement)

    Chromosome 1 - NC_045559.1Genomic Context describing neighboring genes Neighboring gene shisa like 1 Neighboring gene parvin gamma Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase Pnpla3-like Neighboring gene SAMM50 sorting and assembly machinery component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045559.1 Chromosome 1 Reference bAytFul2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment or maintenance of cell polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lamellipodium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lamellipodium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-parvin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bAytFul2.pri Primary Assembly

    Genomic

    1. NC_045559.1 Reference bAytFul2.pri Primary Assembly

      Range
      73709576..73795981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032207749.1 → XP_032063640.1  beta-parvin isoform X1

      UniProtKB/TrEMBL
      A0A6J3EP20
      Related
      ENSAFUP00000023647.1, ENSAFUT00000029749.1
      Conserved Domains (2) summary
      cd21336
      Location:89 → 194
      CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
      cl00030
      Location:236 → 365
      CH_SF; calponin homology (CH) domain superfamily

    2. XM_032207750.1 → XP_032063641.1  beta-parvin isoform X2

      UniProtKB/TrEMBL
      A0A6J3EIT4
      Conserved Domains (2) summary
      cd21336
      Location:66 → 171
      CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
      cl00030
      Location:213 → 342
      CH_SF; calponin homology (CH) domain superfamily

    3. XM_032207751.1 → XP_032063642.1  beta-parvin isoform X3

      UniProtKB/TrEMBL
      A0A6J3EP42
      Conserved Domains (2) summary
      cd21336
      Location:51 → 156
      CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
      cl00030
      Location:198 → 327
      CH_SF; calponin homology (CH) domain superfamily

    4. XM_032207752.1 → XP_032063643.1  beta-parvin isoform X4

      UniProtKB/TrEMBL
      A0A6J3EQI1
      Conserved Domains (2) summary
      cd21336
      Location:36 → 141
      CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
      cl00030
      Location:183 → 312
      CH_SF; calponin homology (CH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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