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    LOC116408360 probable E3 ubiquitin-protein ligase TRIM8 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 116408360, updated on 4-Nov-2024

    Summary

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    Official Symbol
    LOC116408360provided by Xenbase
    Official Full Name
    probable E3 ubiquitin-protein ligase TRIM8provided by Xenbase
    Primary source
    Xenbase:XB-GENE-29094075
    See related
    AllianceGenome:Xenbase:XB-GENE-29094075
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable transferase activity and zinc ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC116408360 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (213221070..213222042, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase TRIM8 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene probable E3 ubiquitin-protein ligase TRIM8 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030677.2 Chromosome 1 Reference UCB_Xtro_10.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase TRIM8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      213221070..213222042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895132.1 → XP_031750992.1  probable E3 ubiquitin-protein ligase TRIM8

      UniProtKB/TrEMBL
      A0A8J1IZG6
      Conserved Domains (4) summary
      smart00502
      Location:184 → 311
      BBC; B-Box C-terminal domain
      cd19769
      Location:139 → 185
      Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
      cl00034
      Location:91 → 132
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:10 → 56
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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